Charitini Nikolaidou MSc candidate
de Menezes AB; Gashchak S; Wood MD; Beresford NA. (2024) Relationships between radiation, wildfire and the soil microbial communities in the Chornobyl Exclusion Zone. Science of the Total Environment 950:175381. https://doi.org/10.2139/ssrn.4764253
Porras-Socias P.; Tomasino M.P.; Fernandes J.P.; de Menezes A.B.; Fernández B.; Collins G.; Alves M.J.; Castro R.; Gomes C.R.; Almeida C.M.R.; Mucha A.P. (2024) Removal of metals and emergent contaminants from liquid digestates in constructed wetlands for agricultural reuse. Frontiers in Microbiology 15:1388895. https://doi.org/10.3389/fmicb.2024.1388895
Khan A.S.; Finn J.A., Menezes A.B., Kirwan S.F., Waters S.M., Krol D.J. (2023) Effects of multispecies and monoculture forages on nutrient digestibility and fermentation responses using an in vitro rumen simulation technique (RUSITEC). Animal - Open Space 100052. https://10.1016/j.anopes.2023.100052
Ryan K., de Menezes A.B., Finn J.A., Brennan F.P. (2023) Plant species and soil depth differentially affect microbial diversity and function in grasslands. Journal of Sustainable Agriculture and Environment 2:397–411. https://doi.org/10.1002/sae2.12077
Gardner B., Betson M., Rosel A.C., Caniça M., Chambers M.A., Contadini F.M., Villeta L.C.G., Hassan M.M., La Ragione R.M., de Menezes A., Messina D., Nichols G., Olivença D.V., Phalkey R., Prada J.M., Ruppitsch W., Santorelli L. A., Selemetas N., Tharmakulasingam M., van Vliet A.H.M., Woegerbauer M, Deza-Cruz I., Lo Iacono G. (2023) Factors associated with the prevalence of antibiotic resistance in the environment from a One Health perspective: Protocol for a systematic evidence map. Environment International 171:107707. https://doi.org/10.1016/j.envint.2022.107707
Lopes P.R, Cruz V.H., Menezes A.B., Gadanhoto B.P., Moreira B.R., Mendes C.R., Mazzeo-Morales D.E., Dilarri G., Montagnolli R.N. (2022) Microbial bioremediation of pesticides in agricultural soils: An integrative review on natural attenuation, bioaugmentation and biostimulation. Reviews in Environmental Science and Bio/Technology 21:851-876. https://doi.org/10.1007/s11157-022-09637-w
Pereira L.B. Gambarini, V.M. de O., de Menezes, A.B., Ottoboni, L.M.M., Vicentini, R., 2022. Influence of sugarcane variety on rhizosphere microbiota under irrigated and water-limiting conditions. Current Microbiology 79:246. https://doi.org/10.1007/s00284-022-02946-x
G. Charalampous, E. Fragkou, K.A. Kormas, A.B. de Menezes, P.N. Polymenakou, N. Pasadakis, N. Kalogerakis, E. Antoniou, E. Gontikaki, (2021) Comparison of hydrocarbon-degrading consortia from surface and deep waters of the Eastern Mediterranean Sea: characterization and degradation potential, Energies. 14, 2246. https://doi.org/10.3390/en14082246.
Pereira, L.B., Gambarini, V.M. de O., de Menezes, A.B., Ottoboni, L.M.M., Vicentini, R., 2020. Responses of the sugarcane rhizosphere microbiota to different levels of water stress. Applied Soil Ecology 103817. https://doi.org/10.1016/j.apsoil.2020.103817
Qiu, S., Li, Z., Sheng, X., Wang, S., Hu, Y., de Menezes, A.B., Chen, L., Liu, R., Zhan, X., 2020. A novel technology with precise oxygen-input control: Application of the partial nitritation-anammox process. Water Research. 185, 116213. https://doi.org/10.1016/j.watres.2020.116213
Nicolas A Beresford, Nele Horemans, David Copplestone, Katherine E Raines, German Orizaola, Mike D Wood, Paulus Laanen, Helen C Whitehead, Jessica E Burrows, Matthew C Tinsley, James T Smith, Jean-Marc Bonzom, Beatrice Gagnaire, Christelle Adam-Guillermin, Sergiy Gashchak, AN Jha, A de Menezes, Neil Willey, David Spurgeon (2019) Towards solving a scientific controversy – The effects of ionising radiation on the environment. DOI: 10.1016/j.jenvrad.2019.106033
Sarah Goertz; Alexandre B de Menezes; Richard J Birtles; Jonathan Fenn; Ann E Lowe; Andrew DC MacColl; Benoit Poulin; Stuart Young; Janette E Bradley; Christopher H Taylor (2019) Geographical location influences the composition of the gut microbiota in wild house mice at a fine spatial scale. DOI: 10.1371/journal.pone.0222501.
Storey S.; Mohd Ashaari M.; Clipson, N.; Doyle E.; de Menezes, A.B. (2018) Opportunistic bacteria dominate the soil microbiome response to phenanthrene in a microcosm-based study. DOI: 10.3389/fmicb.2018.02815.
de Menezes, A.B., Prendergast-Miller, M., Richardson A.E., Toscas, P., Farrell, M., MacDonald L.M., Baker G., Wark, T., Thrall P.H. (2018) Earthworm-induced shifts in microbial diversity in soils with rare versus established invasive earthworm populations. FEMS Microbiology Ecology. DOI: 10.1093/femsec/fiy051
George TS, Giles CD, Menezes-Blackburn D, Cade-Menun BJ, Condron LM, Gama-Rodrigues AC, Jaisi D, Lang F, Neal AL, Stutter MI, Almeida DS, Bol R, Cabugao KG, Celi L, Cotner JB, Feng G, Goll DS, Hallama M, Krueger J, Mezeli MM, Plassard C, Rosling A, Darch T, Fraser T, Giesler R, Richardson AE, Tamburini F, Turner BL, Shand CA, Lumsdon DG, Zhang H, Blackwell MSA, Wearing C, Almås ÅR, Audette Y, Bertrand I, Beyhaut E, Boitt G, Bradshaw N, Brearley CA, Bruulsema TW, Ciais P, Cozzolino V, Cuevas PD, Mora ML, de Menezes AB, Dodd RJ, Dunfield K, Engl C, Frazão JJ, Garland G, González Jiménez, JL, Graca J, Granger SJ, Harrison AF, Heuck C, Hou EQ, Johnes PJ, Kaiser K, Kjær HA, Klumpp E, Lamb AL, Macintosh KA, Mackay EB, McGrath J, McIntyre C, McLaren T, Mészáros E, Missong A, Mooshammer M, Negrón CP, Nelson L-A, Pfahler V, Poblete-Grant P, Randall M, Seguel A, Seth K, Smith AC, Smits MM, Sobarzo JA, Spohn M, Tawaraya K, Tibbett M, Voroney P, Wallander H, Wasaki J , Haygarth PM (2018) Organic phosphorus in the terrestrial environment: A perspective on the state of the art and future priorities. 427:191-208. https://10.1007/s11104-017-3391-x
de Menezes, A.B., Richardson A.E., Thrall P.H. (2017) Linking fungal-bacterial co-occurrences to soil ecosystem function. Current Opinion in Microbiology 37:135-141
Antwis R.E., Griffiths, S.M., Xavier A.H., Aranega-Bou, P., Arce A., Bettridge A.S., Brailsford F.L., de Menezes A.B., Devaynes A., Forbes K.M., Fry E.L, Goodhead I.B., Haskell E., Heys C., James J., Johnston S.R, Lewis G.R., Lewis Z., Macey M.C., McCarthy A., McDonald J.E., Mejia Florez N.L., O’Brien D., Orland O., Pautasso M, Reid W.D.K., Robinson H.A., Wilson K., Sutherland W.J. (2017) 50 important research questions in microbial ecology. 93:fix044. https://10.1093/femsec/fix044
Prendergast-Miller, M., de Menezes, A.B., Richardson A.E., Toscas, P., Farrell, M., Bissett, A., MacDonald L.M., Baker G., Wark, T., Thrall P.H. (2017) Wildfire impact: Natural experiment reveals differential short-term changes in soil microbial communities. 109:1-13. https://doi.org/10.1016/j.soilbio.2017.01.027
de Menezes, A.B., Müller, C., Clipson, N., Doyle E. (2016) The soil microbiome at the Gi-FACE experiment responds to a moisture gradient but not to CO2 enrichment. Microbiology 162:1572-1582
Group author in: Henderson, G., Cox, F., Ganesh, S., Jonker, A., Young, W., Global Rumen Census Collaborators & Janssen, P.H. (2015) Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range. 5:14567
de Menezes, A.B., Prendergast-Miller, M., Richardson A.E., Toscas, P., Farrell, M., MacDonald L.M., Baker G., Wark, T., Thrall P.H. (2015) Network analysis reveals that bacteria and fungi form modules that correlate independently with soil parameters. Environmental Microbiology 17:2677-2689
Prendergast-Miller, M.; de Menezes, A.B.; Richardson A.E.; Toscas, P.; Farrell, M.; Bissett, A.; MacDonald L.M.; Baker G.; Wark, T.; Thrall P.H. (2015) Soil nitrogen pools and turnover in native woodland and managed pasture soils. 85:63-71
de Menezes, A.B., Prendergast-Miller, M., Richardson A.E., Poonpatana, P., Farrell, Bissett, A., M., MacDonald L.M., Baker G., Thrall P.H. (2015) C/N ratio drives soil actinobacterial cellobiohydrolase gene diversity. Applied and Environmental Microbiology 81:3016-3028
Creamer, C.A., de Menezes, A.B., Krull, E.S., Sanderman J., Newton-Walters, R., Farrell, M. (2015) Microbial community structure mediates response of soil C decomposition to litter addition and warming. 80:175-188. https://doi.org/10.1016/j.soilbio.2014.10.008
de Menezes, A.B., Clipson N., Doyle E. (2012) Comparative metatranscriptomics reveals widespread community responses during phenanthrene degradation in soil. Environmental Microbiology 14:2577-2588
de Menezes, A.B., Allison, H.E., McCarthy, A.J. (2012) Importance of Micromonospora spp. as colonisers of cellulose in two freshwater lakes as demonstrated by reverse transcriptase qPCR of 16S rRNA. Applied and Environmental Microbiology 78:3495-3499
de Menezes, A.B., Lewis E, O’Donovan M., O’Neill B.F., Clipson N., Doyle E. (2011) Microbiome analysis of dairy cows fed pasture or total mixed ration diets. FEMS Microbiology Ecology 78:256-265
McDonald, J.; de Menezes, A.B.; Allison, H.E., McCarthy A.J. (2009) Molecular biological detection and quantification of novel Fibrobacter populations in freshwater lakes. 75: 5148-5152
de Menezes, A.B., Lockhart R.J., Cox, M.J., Allison, H.E., McCarthy A.J. (2008) Cellulose degradation by micromonosporas recovered from freshwater lakes and classification of these actinomycetes by DNA gyrase B gene sequencing. Applied and Environmental Microbiology 74: 7080-7084
Llewellyn C.A., Tarran, G.A., Galliene C.P., Cummings, D.G.; de Menezes, A.; Rees, A.P., Dixon, J.L., Widdicombe C.E., Fileman, E.S., Wilson, W.H. (2008) Microbial dynamics during the decline of a spring bloom in the Northeast Atlantic. 30: 261-273